cluster_germline: Cluster contigs by germline properties
In CellaRepertorium: Data structures, clustering and testing for single cell immune receptor repertoires (scRNAseq RepSeq/AIRR-seq)

Cluster contigs by germline properties

cluster_germline(
  ccdb,
  segment_keys = c("v_gene", "j_gene", "chain"),
  cluster_pk = "cluster_idx"
)

`ccdb`	`ContigCellDB()`
`segment_keys`	fields in `contig_tbl` that identify a cluster
`cluster_pk`	name of cluster to be added to `cluster_tbl`

ContigCellDB()

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data(ccdb_ex)
ccdb_ex = cluster_germline(ccdb_ex)
ccdb_ex$cluster_tbl

CellaRepertorium documentation built on Nov. 8, 2020, 7:48 p.m.

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