dot-cluster_permute_test: Cell permutation tests (internal)

In CellaRepertorium: Data structures, clustering and testing for single cell immune receptor repertoires (scRNAseq RepSeq/AIRR-seq)

Description

Cell permutation tests (internal)

Usage

.cluster_permute_test(
  labels,
  covariates,
  strata,
  statistic,
  n_perm,
  alternative,
  ...
)

Arguments

labels	factor of length n
covariates	data.frame of length n
strata	factor
statistic	function of label (vector) and covariate (data.frame). Must return a scalar
n_perm	number of permutations to run
alternative	character naming the direction statistic should be fall under the alternative hypothesis
...	passed along to statistic

Value

a list containing the observed value of the statistic, its expectation (under independence), a p-value, and the Monte Carlo standard error (of the expected value).

CellaRepertorium documentation built on Nov. 8, 2020, 7:48 p.m.