excludeFromBam: Removes reads from a bam file

Description Usage Arguments Value Author(s)

View source: R/excludeFromBam.R

Description

Returns a GAlignments excluding reads based on either name and/or location

Usage

1
excludeFromBam(bam, exclude.ranges = GRanges(), exclude.names = NA)

Arguments

bam

a GAlignments object

exclude.ranges

Regions to exclude, as GRanges.

exclude.names

A character vector of alignments names to exclude

Value

The bam minus the excluded regions

Author(s)

Helen Lindsay


CrispRVariants documentation built on Nov. 1, 2018, 2:20 a.m.