makeAlignmentTilePlot: Internal CrispRVariants function for creating the...

In CrispRVariants: Tools for counting and visualising mutations in a target location

Description

Takes a matrix of characters, x and y locations and colours, creates a ggplot geom_tile plot with tiles labelled by the characters.

Usage

makeAlignmentTilePlot(m, ref, xlab, plot.text.size, axis.text.size, xtick.labs,
  xtick.breaks, tile.height)

Arguments

m	A matrix with column headings Var1: y location, Var2: x location, cols: tile fill colour, isref: transparency value text_cols: text colour
ref	The reference sequence, only used for checking the number of x-tick labels when x-tick breaks are not supplied
xlab	Label for the x axis
plot.text.size	Size for text within plot
axis.text.size	Size for text on axes
xtick.labs	x axis labels
xtick.breaks	Locations of x labels
tile.height	Controls whitespace between tiles

Value

A ggplot object

Author(s)

Helen Lindsay

CrispRVariants documentation built on Nov. 8, 2020, 11:09 p.m.