findSNVs: Find frequent SNVs

Description Usage Arguments Value Author(s)

Description

Find single nucleotide variants (SNVs) above a specified frequency in a table of variants.

Usage

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findSNVs(obj, ...)

## S4 method for signature 'CrisprSet'
findSNVs(obj, ..., freq = 0.25,
  include.chimeras = TRUE)

Arguments

obj

An object containing variant counts

...

additional arguments

freq

minimum frequency snv to return (Default: 0.25)

include.chimeras

include chimeric reads when calculating SNV frequencies (Default: TRUE)

Value

A vector of SNVs and their frequencies

Author(s)

Helen Lindsay


CrispRVariants documentation built on Nov. 1, 2018, 2:20 a.m.