selectOps: selectOps

Description Usage Arguments Value Author(s)

Description

select CIGAR operations in a region of interest.

Usage

1
2
3
4
5
selectOps(cigar, ...)

## S4 method for signature 'character'
selectOps(cigar, ...,
  ops = GenomicAlignments::CIGAR_OPS, op.regions = NULL, pos = 1L)

Arguments

cigar

CIGAR strings

...

Extra arguments (Not currently used)

ops

CIGAR operations to consider (Default: all)

op.regions

(GRanges) Return operations only in these regions

pos

An offset for the cigar ranges

Value

A GRanges list of opertion locations in reference space with a metadata column for the operation width in query space.

Author(s)

Helen Lindsay


CrispRVariants documentation built on Nov. 1, 2018, 2:20 a.m.