DAPAR
Tools for the Differential Analysis of Proteins Abundance with R

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CountPep: Compute the number of peptides used to aggregate proteins

CountPep: Compute the number of peptides used to aggregate proteins
In DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Description Usage Arguments Value Author(s) Examples

Description

This function computes the number of peptides used to aggregate proteins.

Usage

1
CountPep(M)

Arguments

M

A "valued" adjacency matrix in which lines and columns correspond respectively to peptides and proteins.

Value

A vector of boolean which is the adjacency matrix but with NA values if they exist in the intensity matrix.

Author(s)

Alexia Dorffer

Examples

1
2
3
4
5
library(DAPARdata)
utils::data(Exp1_R25_pept)
protID <- "Protein_group_IDs"
M <- BuildAdjacencyMatrix(Exp1_R25_pept[1:1000], protID, FALSE)
CountPep(M)

DAPAR documentation built on April 11, 2021, 6 p.m.

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