Get_AllComparisons: Returns list that contains a list of the statistical tests...
In DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Description Usage Arguments Value Author(s) Examples

This method returns a list of the statistical tests performed with DAPAR and recorded in an object of class MSnSet.

1	Get_AllComparisons(obj)

obj

An object of class MSnSet.

A list of two slots: logFC and P_Value

Samuel Wieczorek

utils::data(Exp1_R25_pept, package='DAPARdata')
obj <- Exp1_R25_pept
keepThat <- mvFilterGetIndices(obj, condition='WholeMatrix', threshold=ncol(obj))
obj <- mvFilterFromIndices(obj, keepThat)
qData <- Biobase::exprs(obj)
sTab <- Biobase::pData(obj)
allComp <- limmaCompleteTest(qData,sTab)
data <- list(logFC=allComp$logFC[1], P_Value = allComp$P_Value[1])
obj <- diffAnaSave(obj, allComp, data)
ll <- Get_AllComparisons(obj)