aggregateSum: Compute the intensity of proteins with the sum of the...
In DAPAR: Tools for the Differential Analysis of Proteins Abundance with R
Description
Usage
Arguments
Value
Author(s)
Examples
Description
This function computes the intensity of proteins based on the sum of the
intensities of their peptides.
Usage
1
aggregateSum(obj.pep, X)
Arguments
obj.pep
A matrix of intensities of peptides
X
An adjacency matrix in which lines and columns correspond
respectively to peptides and proteins.
Value
A matrix of intensities of proteins
Author(s)
Alexia Dorffer
Examples
1
2
3
4
5
6
7
8
## Not run:
utils::data(Exp1_R25_pept, package='DAPARdata')
protID <- "Protein_group_IDs"
obj.pep <- Exp1_R25_pept[1:1000]
X <- BuildAdjacencyMatrix(obj.pep, protID, FALSE)
DAPAR::aggregateSum(obj.pep, X)
## End(Not run)
DAPAR documentation built on April 11, 2021, 6 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
This function computes the intensity of proteins based on the sum of the intensities of their peptides.
Usage
1 | aggregateSum(obj.pep, X)
|
Arguments
obj.pep |
A matrix of intensities of peptides |
X |
An adjacency matrix in which lines and columns correspond respectively to peptides and proteins. |
Value
A matrix of intensities of proteins
Author(s)
Alexia Dorffer
Examples
1 2 3 4 5 6 7 8 | ## Not run:
utils::data(Exp1_R25_pept, package='DAPARdata')
protID <- "Protein_group_IDs"
obj.pep <- Exp1_R25_pept[1:1000]
X <- BuildAdjacencyMatrix(obj.pep, protID, FALSE)
DAPAR::aggregateSum(obj.pep, X)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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