API for DAPAR
Tools for the Differential Analysis of Proteins Abundance with R

Global functions
BuildAdjacencyMatrix Man page Source code
BuildColumnToProteinDataset Man page Source code
BuildColumnToProteinDataset_par Man page Source code
CVDistD Man page Source code
CVDistD_HC Man page Source code
CountPep Man page Source code
GOAnalysisSave Man page Source code
GetNbPeptidesUsed Man page Source code
GraphPepProt Man page Source code
LH0 Man page Source code
LH0.lm Man page Source code
LH1 Man page Source code
LH1.lm Man page Source code
StringBasedFiltering Man page Source code
StringBasedFiltering2 Man page Source code
addOriginOfValue Man page Source code
aggregateIter Man page Source code
aggregateIterParallel Man page Source code
aggregateMean Man page Source code
aggregateSum Man page Source code
aggregateTopn Man page Source code
barplotEnrichGO_HC Man page Source code
barplotGroupGO_HC Man page Source code
boxPlotD Man page Source code
boxPlotD_HC Man page Source code
check.conditions Man page Source code
check.design Man page Source code
compareNormalizationD Man page Source code
compareNormalizationD_HC Man page Source code
compute.t.tests Man page Source code
corrMatrixD Man page Source code
corrMatrixD_HC Man page Source code
createMSnset Man page Source code
deleteLinesFromIndices Man page Source code
densityPlotD Man page Source code
densityPlotD_HC Man page Source code
diffAnaComputeFDR Man page Source code
diffAnaGetSignificant Man page Source code
diffAnaSave Man page Source code
diffAnaVolcanoplot Man page Source code
diffAnaVolcanoplot_rCharts Man page Source code
enrich_GO Man page Source code
finalizeAggregation Man page Source code
findMECBlock Man page Source code
formatLimmaResult Man page Source code
fudge2LRT Man page Source code
getIndicesConditions Man page Source code
getIndicesOfLinesToRemove Man page Source code
getListNbValuesInLines Man page Source code
getNumberOf Man page Source code
getNumberOfEmptyLines Man page Source code
getPourcentageOfMV Man page Source code
getProcessingInfo Man page Source code
getProteinsStats Man page Source code
getQuantile4Imp Man page Source code
getTextForAggregation Man page Source code
getTextForAnaDiff Man page Source code
getTextForFiltering Man page Source code
getTextForGOAnalysis Man page Source code
getTextForHypothesisTest Man page Source code
getTextForNewDataset Man page Source code
getTextForNormalization Man page Source code
getTextForpeptideImputation Man page Source code
getTextForproteinImputation Man page Source code
group_GO Man page Source code
hc_logFC_DensityPlot Man page Source code
hc_mvTypePlot2 Man page Source code
heatmap.DAPAR Man page Source code
heatmapD Man page Source code
impute.detQuant Man page Source code
impute.pa2 Man page Source code
inner.aggregate.iter Man page Source code
inner.aggregate.topn Man page Source code
inner.mean Man page Source code
inner.sum Man page Source code
is.MV Man page Source code
is.OfType Man page Source code
limmaCompleteTest Man page Source code
listSheets Man page Source code
make.contrast Man page Source code
make.design Man page Source code
make.design.1 Man page Source code
make.design.2 Man page Source code
make.design.3 Man page Source code
mvFilter Man page Source code
mvFilterFromIndices Man page Source code
mvFilterGetIndices Man page Source code
mvHisto Man page Source code
mvHisto_HC Man page Source code
mvImage Man page Source code
mvPerLinesHisto Man page Source code
mvPerLinesHistoPerCondition Man page Source code
mvPerLinesHistoPerCondition_HC Man page Source code
mvPerLinesHisto_HC Man page Source code
my_hc_ExportMenu Man page Source code
my_hc_chart Man page Source code
nonzero Man page Source code
pepa.test Man page Source code
plotPCA_Eigen Man page Source code
plotPCA_Eigen_hc Man page Source code
plotPCA_Ind Man page Source code
plotPCA_Var Man page Source code
proportionConRev_HC Man page Source code
rbindMSnset Man page Source code
reIntroduceMEC Man page Source code
readExcel Man page Source code
removeLines Man page Source code
samLRT Man page Source code
saveParameters Man page Source code
scatterplotEnrichGO_HC Man page Source code
setMEC Man page Source code
test.design Man page Source code
translatedRandomBeta Man page Source code
univ_AnnotDbPkg Man page Source code
violinPlotD Man page Source code
wrapper.CVDistD Man page Source code
wrapper.CVDistD_HC Man page Source code
wrapper.compareNormalizationD Man page Source code
wrapper.compareNormalizationD_HC Man page Source code
wrapper.corrMatrixD Man page Source code
wrapper.corrMatrixD_HC Man page Source code
wrapper.dapar.impute.mi Man page Source code
wrapper.hc_mvTypePlot2 Man page Source code
wrapper.heatmapD Man page Source code
wrapper.impute.KNN Man page Source code
wrapper.impute.detQuant Man page Source code
wrapper.impute.fixedValue Man page Source code
wrapper.impute.mle Man page Source code
wrapper.impute.pa Man page Source code
wrapper.impute.pa2 Man page Source code
wrapper.impute.slsa Man page Source code
wrapper.mvHisto Man page Source code
wrapper.mvHisto_HC Man page Source code
wrapper.mvImage Man page Source code
wrapper.mvPerLinesHisto Man page Source code
wrapper.mvPerLinesHistoPerCondition Man page Source code
wrapper.mvPerLinesHistoPerCondition_HC Man page Source code
wrapper.mvPerLinesHisto_HC Man page Source code
wrapper.normalizeD Man page Source code
wrapper.pca Man page Source code
wrapper.t_test_Complete Man page Source code
wrapperCalibrationPlot Man page Source code
writeMSnsetToCSV Man page Source code
writeMSnsetToExcel Man page Source code
DAPAR documentation built on Dec. 14, 2018, 6 p.m.