heatmapD: This function is a wrapper to 'heatmap.2' that displays...

In DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Description

Heatmap of the quantitative proteomic data of a MSnSet object

Usage

heatmapD(
  qData,
  conds,
  distance = "euclidean",
  cluster = "complete",
  dendro = FALSE
)

Arguments

qData	A dataframe that contains quantitative data.
conds	A vector containing the conditions
distance	The distance used by the clustering algorithm to compute the dendrogram. See help(heatmap.2)
cluster	the clustering algorithm used to build the dendrogram. See help(heatmap.2)
dendro	A boolean to indicate fi the dendrogram has to be displayed

Value

A heatmap

Author(s)

Florence Combes, Samuel Wieczorek, Enor Fremy

Examples

## Not run: 
utils::data(Exp1_R25_pept, package='DAPARdata')
obj <- mvFilter(Exp1_R25_pept[1:1000], "WholeMatrix", 6)
qData <- Biobase::exprs(obj)
conds <- pData(obj)[['Condition']]
heatmapD(qData, conds)

## End(Not run)

DAPAR documentation built on April 11, 2021, 6 p.m.