BuildAdjacencyMatrix: Function matrix of appartenance group
In DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Method to create a binary matrix with proteins in columns and peptides in lines on a MSnSet object (peptides)

1	BuildAdjacencyMatrix(obj.pep, protID, unique = TRUE)

`obj.pep`	An object (peptides) of class `MSnSet`.
`protID`	The name of proteins ID column
`unique`	A boolean to indicate whether only the unique peptides must be considered (TRUE) or if the shared peptides have to be integrated (FALSE).

A binary matrix

Florence Combes, Samuel Wieczorek, Alexia Dorffer

1 2	utils::data(Exp1_R25_pept, package='DAPARdata') BuildAdjacencyMatrix(Exp1_R25_pept[1:1000], "Protein_group_IDs", TRUE)

DAPAR documentation built on April 11, 2021, 6 p.m.

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