hc_logFC_DensityPlot: Density plots of logFC values
In DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Description Usage Arguments Value Author(s) Examples

This function show the density plots of Fold Change (the same as calculated by limma) for a list of the comparisons of conditions in a differnetial analysis.

1	hc_logFC_DensityPlot(df_logFC, threshold_LogFC = 0, palette = NULL)

`df_logFC`	A dataframe that contains the logFC values
`threshold_LogFC`	The threshold on log(Fold Change) to distinguish between differential and non-differential data
`palette`	xxx

A highcharts density plot

Samuel Wieczorek

utils::data(Exp1_R25_pept, package='DAPARdata')
obj <- Exp1_R25_pept[1:1000]
keepThat <- mvFilterGetIndices(obj, condition='WholeMatrix', threshold=ncol(obj))
obj <- mvFilterFromIndices(obj, keepThat)
qData <- Biobase::exprs(obj)
sTab <- Biobase::pData(obj)
res <- limmaCompleteTest(qData,sTab)
hc_logFC_DensityPlot(res$logFC, threshold_LogFC=1)