StringBasedFiltering2: Removes lines in the dataset based on a prefix strings.

In DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Description

This function removes lines in the dataset based on prefix strings.

Usage

StringBasedFiltering2(obj, cname = NULL, tag = NULL)

Arguments

obj	An object of class MSnSet.
cname	The name of the column that correspond to the line to filter
tag	A character string that is the prefix for the contaminants to find in the data

Value

An list of 4 items : obj : an object of class MSnSet in which the lines have been deleted deleted : an object of class MSnSet which contains the deleted lines

Author(s)

Samuel Wieczorek

Examples

utils::data(Exp1_R25_pept, package='DAPARdata')
StringBasedFiltering2(Exp1_R25_pept, 'Potential_contaminant', '+')

DAPAR documentation built on April 11, 2021, 6 p.m.