SumByColumns: Normalisation SumByColumns
In DAPAR: Tools for the Differential Analysis of Proteins Abundance with R
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Normalisation SumByColumns
Usage
1
SumByColumns(qData, conds = NULL, type = NULL, subset.norm = NULL)
Arguments
qData
xxxx
conds
xxx
type
Available values are "overall" (shift all the
sample distributions at once) or "within conditions" (shift the sample
distributions within each condition at a time).
subset.norm
A vector of index indicating rows to be used for normalization
Value
A normalized numeric matrix
Author(s)
Samuel Wieczorek, Thomas Burger, Helene Borges, Anais Courtier, Enora Fremy
Examples
1
2
3
4
utils::data(Exp1_R25_pept, package='DAPARdata')
qData <- Biobase::exprs(Exp1_R25_pept)
conds <- Biobase::pData(Exp1_R25_pept)$Condition
normalized <- SumByColumns(qData, conds, type="within conditions", subset.norm=1:10)
DAPAR documentation built on April 11, 2021, 6 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Normalisation SumByColumns
Usage
1 | SumByColumns(qData, conds = NULL, type = NULL, subset.norm = NULL)
|
Arguments
qData |
xxxx |
conds |
xxx |
type |
Available values are "overall" (shift all the sample distributions at once) or "within conditions" (shift the sample distributions within each condition at a time). |
subset.norm |
A vector of index indicating rows to be used for normalization |
Value
A normalized numeric matrix
Author(s)
Samuel Wieczorek, Thomas Burger, Helene Borges, Anais Courtier, Enora Fremy
Examples
1 2 3 4 | utils::data(Exp1_R25_pept, package='DAPARdata')
qData <- Biobase::exprs(Exp1_R25_pept)
conds <- Biobase::pData(Exp1_R25_pept)$Condition
normalized <- SumByColumns(qData, conds, type="within conditions", subset.norm=1:10)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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