wrapperCalibrationPlot: Performs a calibration plot on an 'MSnSet' object, calling...
In DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Description Usage Arguments Value Author(s) Examples

This function is a wrapper to the calibration.plot method of the cp4p package for use with MSnSet objects.

1	wrapperCalibrationPlot(vPVal, pi0Method = "pounds")

`vPVal`	A dataframe that contains quantitative data.
`pi0Method`	A vector of the conditions (one condition per sample).

A plot

Samuel Wieczorek

utils::data(Exp1_R25_pept, package='DAPARdata')
obj <- Exp1_R25_pept[1:1000]
keepThat <- mvFilterGetIndices(obj, condition='WholeMatrix', threshold=ncol(obj))
obj <- mvFilterFromIndices(obj, keepThat)
qData <- Biobase::exprs(obj)
sTab <- Biobase::pData(obj)
limma <- limmaCompleteTest(qData,sTab)
wrapperCalibrationPlot(limma$P_Value[,1])