DAVIDQuery: Retrieval from the DAVID bioinformatics data resource into R

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Tools to retrieve data from DAVID, the Database for Annotation, Visualization and Integrated Discovery

Author
Roger Day, Alex Lisovich
Date of publication
None
Maintainer
Roger Day <day01@pitt.edu>
License
GPL-2
Version
1.24.0

View on Bioconductor

Man pages

affyToUniprot
Obtain Affymetrix probeset IDs for given Uniprot IDs.
bracketedStrings
Extract bracketed substrings.
catalogDAVIDResultsByTool
Create a catalog of types of DAVID results.
convertIDList
Retrieves conversions from one DAVID ID type in the input ID...
DAVIDQuery
DAVIDQuery
DAVIDQueryLoop
Access DAVID multiple times.
DAVIDQuery-package
Retrieval from DAVID bioinformatics data resource.
DAVIDToolChoices
Choices for the DAVID query parameters
DAVIDURLBase
Base URL for the DAVID database.
findInBrackets
Extract the substring(s) between the left and right...
formatDAVIDResult
Format the character table returned by DAVID.
getAffyChipTypes
Retrieve all Affymetrix array type available from DAVID...
getAffyProbesetList
Retrieve Affy probeset IDs from DAVID.
getAnnotationChoices
Retrieve all possible annotation values used in the...
getHTMLChoices
Get (name,value) pairs from the HTML page selection box...
getIdConversionChoices
Retrieve all possible values defining the type of the...
idExampleList
idExampleList
removeHTMLComments
Remove HTML comments from character string representing the...
requestIDConversion
Request a conversion for a previously uploaded ID List...
testGene2Gene
Test DAVID gene2gene tool
uniprotToAffy
Obtain Affymetrix probeset IDs for given Uniprot IDs.
uploadIDList
Upload an ID list to the DAVID query system...

Files in this package

DAVIDQuery/DESCRIPTION
DAVIDQuery/NAMESPACE
DAVIDQuery/R
DAVIDQuery/R/DAVIDAffyChipChoices.R
DAVIDQuery/R/DAVIDAnnotChoices.R
DAVIDQuery/R/DAVIDQuery.R
DAVIDQuery/R/DAVIDQueryLoop.R
DAVIDQuery/R/DAVIDToolChoices.R
DAVIDQuery/R/DAVIDTypeChoices.R
DAVIDQuery/R/DAVIDURLBase.R
DAVIDQuery/R/affyToUniprot.R
DAVIDQuery/R/bracketedStrings.R
DAVIDQuery/R/catalogDAVIDResultsByTool.R
DAVIDQuery/R/convertIDList.R
DAVIDQuery/R/findInBrackets.R
DAVIDQuery/R/formatAnnotationReport.R
DAVIDQuery/R/formatDAVIDResult.R
DAVIDQuery/R/formatGene2Gene.R
DAVIDQuery/R/formatGeneReport.R
DAVIDQuery/R/formatGeneReportFull.R
DAVIDQuery/R/formatList.R
DAVIDQuery/R/getAffyChipTypes.R
DAVIDQuery/R/getAffyProbesetList.R
DAVIDQuery/R/getAnnotationChoices.R
DAVIDQuery/R/getHTMLChoices.R
DAVIDQuery/R/getIdConversionChoices.R
DAVIDQuery/R/idExampleList.R
DAVIDQuery/R/removeHTMLComments.R
DAVIDQuery/R/requestIDConversion.R
DAVIDQuery/R/testGene2Gene.R
DAVIDQuery/R/uniprotToAffy.R
DAVIDQuery/R/uploadIDList.R
DAVIDQuery/R/zzz.R
DAVIDQuery/build
DAVIDQuery/build/vignette.rds
DAVIDQuery/inst
DAVIDQuery/inst/doc
DAVIDQuery/inst/doc/DAVIDQuery.R
DAVIDQuery/inst/doc/DAVIDQuery.Rnw
DAVIDQuery/inst/doc/DAVIDQuery.pdf
DAVIDQuery/man
DAVIDQuery/man/DAVIDQuery-package.Rd
DAVIDQuery/man/DAVIDQuery.Rd
DAVIDQuery/man/DAVIDQueryLoop.Rd
DAVIDQuery/man/DAVIDToolChoices.Rd
DAVIDQuery/man/DAVIDURLBase.Rd
DAVIDQuery/man/affyToUniprot.Rd
DAVIDQuery/man/bracketedStrings.Rd
DAVIDQuery/man/catalogDAVIDResultsByTool.Rd
DAVIDQuery/man/convertIDList.Rd
DAVIDQuery/man/findInBrackets.Rd
DAVIDQuery/man/formatDAVIDResult.Rd
DAVIDQuery/man/getAffyChipTypes.Rd
DAVIDQuery/man/getAffyProbesetList.Rd
DAVIDQuery/man/getAnnotationChoices.Rd
DAVIDQuery/man/getHTMLChoices.Rd
DAVIDQuery/man/getIdConversionChoices.Rd
DAVIDQuery/man/idExampleList.Rd
DAVIDQuery/man/removeHTMLComments.Rd
DAVIDQuery/man/requestIDConversion.Rd
DAVIDQuery/man/testGene2Gene.Rd
DAVIDQuery/man/uniprotToAffy.Rd
DAVIDQuery/man/uploadIDList.Rd
DAVIDQuery/vignettes
DAVIDQuery/vignettes/DAVIDQuery.Rnw
DAVIDQuery/vignettes/DAVIDQuery.lyx