requestIDConversion: Request a conversion for a previously uploaded ID List...

In DAVIDQuery: Retrieval from the DAVID bioinformatics data resource into R

Description

Request a conversion for a previously uploaded ID List

Usage

requestIDConversion(url, curl, type="AFFYMETRIX_3PRIME_IVT_ID",
    verbose=TRUE)

Arguments

url	The url to post a request to.
curl	The RCurl handle.
type	The DAVID ID Identifier to convert to.
verbose	If TRUE enables diagnostic messages.

Value

A character string containing the source for a conversion results html page including the url to the conversion results text file.

Author(s)

Roger Day, Alex Lisovich

Examples

## Not run: 
myCurlHandle<-RCurl::getCurlHandle(cookiefile="DAVIDCookies.txt");
res1<-RCurl::getURL("http://david.abcc.ncifcrf.gov", curl = myCurlHandle,verbose = TRUE);
url1="http://david.abcc.ncifcrf.gov/tools.jsp";
idList=c("P04264", "P13645", "P35908", "P08729", "P08727", "P25705", "P06576", "Q2KHP4", "Q14764", "P14625");
res2<-uploadIDList(url1,myCurlHandle,idList,type="UNIPROT_ACCESSION",verbose=TRUE);
url2<-"http://david.abcc.ncifcrf.gov/conversion2.jsp";
res3<-requestIDConversion(url=url2,curl=myCurlHandle,type="AFFYMETRIX_3PRIME_IVT_ID",verbose=TRUE);
writeChar(res3, "thirdStageResult.html")

## End(Not run)

DAVIDQuery documentation built on Sept. 12, 2016, 6:11 a.m.