DEGreport: Report of DEG analysis

Creation of a HTML report of differential expression analyses of count data. It integrates some of the code mentioned in DESeq2 and edgeR vignettes, and report a ranked list of genes according to the fold changes mean and variability for each selected gene.

README.md QC and downstream analysis for differential expression RNA-seq

Vignettes Man pages API and functions Files

Package details
Author	Lorena Pantano [aut, cre], John Hutchinson [ctb], Victor Barrera [ctb], Mary Piper [ctb], Radhika Khetani [ctb], Kenneth Daily [ctb], Thanneer Malai Perumal [ctb], Rory Kirchner [ctb], Michael Steinbaugh [ctb]
Bioconductor views	DifferentialExpression GeneExpression ImmunoOncology RNASeq ReportWriting Visualization
Maintainer	Lorena Pantano <lorena.pantano@gmail.com>
License	MIT + file LICENSE
Version	1.26.0
URL	http://lpantano.github.io/DEGreport/
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("DEGreport")`