Files in DESeq2
Differential gene expression analysis based on the negative binomial distribution
NEWS
NAMESPACE
DESCRIPTION
CODE_OF_CONDUCT.md
R/RcppExports.R
R/AllGenerics.R
R/core.R
R/fitNbinomGLMs.R
R/methods.R
R/parallel.R
R/results.R
R/AllClasses.R
R/vst.R
R/rlog.R
R/wrappers.R
R/expanded.R
R/helper.R
R/plots.R
R/lfcShrink.R
src/Makevars.win
src/Makevars
src/RcppExports.cpp
src/DESeq2.cpp
inst/CITATION
inst/doc/DESeq2.html
inst/doc/DESeq2.R
inst/doc/DESeq2.Rmd
inst/extdata/singleCellTab.csv
inst/script/icobra.png
inst/script/testsuite.Rmd
inst/script/icobra_pkg_versions.txt
inst/script/vst.nb
inst/script/vst.pdf
inst/script/icobra_benchmarks.R
inst/script/runScripts.R
inst/script/makeSim.R
build/vignette.rds
tests/testthat.R
tests/testthat/test_plots.R
tests/testthat/test_model_matrix.R
tests/testthat/test_betaFitting.R
tests/testthat/test_optim.R
tests/testthat/test_outlier.R
tests/testthat/test_weights.R
tests/testthat/test_interactions.R
tests/testthat/test_unmix.R
tests/testthat/test_edge_case.R
tests/testthat/test_size_factor.R
tests/testthat/test_nbinomWald.R
tests/testthat/test_collapse.R
tests/testthat/test_methods.R
tests/testthat/test_txi.R
tests/testthat/test_parallel.R
tests/testthat/test_addMLE.R
tests/testthat/test_fpkm.R
tests/testthat/test_lfcShrink.R
tests/testthat/test_construction_errors.R
tests/testthat/test_QR.R
tests/testthat/test_zero_zero.R
tests/testthat/test_LRT.R
tests/testthat/test_design_matrix.R
tests/testthat/test_factors.R
tests/testthat/test_results.R
tests/testthat/test_dispersions.R
tests/testthat/test_linear_mu.R
tests/testthat/test_DESeq.R
vignettes/library.bib
vignettes/DESeq2.Rmd
man/plotPCA.Rd
man/estimateBetaPriorVar.Rd
man/DESeq.Rd
man/normalizationFactors.Rd
man/counts.Rd
man/sizeFactors.Rd
man/DESeqTransform.Rd
man/integrateWithSingleCell.Rd
man/coef.Rd
man/nbinomLRT.Rd
man/priorInfo.Rd
man/fpkm.Rd
man/varianceStabilizingTransformation.Rd
man/nbinomWaldTest.Rd
man/DESeqDataSet.Rd
man/unmix.Rd
man/DESeq2-package.Rd
man/estimateDispersions.Rd
man/dispersions.Rd
man/DESeqResults.Rd
man/plotCounts.Rd
man/plotMA.Rd
man/normalizeGeneLength.Rd
man/estimateDispersionsGeneEst.Rd
man/fpm.Rd
man/estimateSizeFactors.Rd
man/lfcShrink.Rd
man/design.Rd
man/plotDispEsts.Rd
man/plotSparsity.Rd
man/estimateSizeFactorsForMatrix.Rd
man/makeExampleDESeqDataSet.Rd
man/normTransform.Rd
man/show.Rd
man/vst.Rd
man/results.Rd
man/replaceOutliers.Rd
man/summary.Rd
man/dispersionFunction.Rd
man/rlog.Rd
man/collapseReplicates.Rd
