API for DIAlignR
Dynamic Programming Based Alignment of MS2 Chromatograms
| Global functions | |
|---|---|
| AffineAlignObj | Man page |
| AffineAlignObj-class | Man page |
| AffineAlignObjLight | Man page |
| AffineAlignObjLight-class | Man page |
| AffineAlignObjMedium | Man page |
| AffineAlignObjMedium-class | Man page |
| AlignObj | Man page |
| AlignObj-class | Man page |
| DIAlignR | Man page |
| XIC_QFNNTDIVLLEDFQK_3_DIAlignR | Man page |
| alignChromatogramsCpp | Man page Source code |
| alignTargetedRuns | Man page Source code |
| analytesFromFeatures | Man page Source code |
| areaIntegrator | Man page Source code |
| as.list,AffineAlignObj-method | Man page |
| as.list,AffineAlignObjLight-method | Man page |
| as.list,AffineAlignObjMedium-method | Man page |
| as.list,AlignObj-method | Man page |
| calculateIntensity | Man page Source code |
| chromatogramIdAsInteger | Man page Source code |
| constrainSimCpp | Man page Source code |
| doAffineAlignmentCpp | Man page Source code |
| doAlignmentCpp | Man page Source code |
| extractXIC_group | Man page Source code |
| fetchAnalytesInfo | Man page Source code |
| fetchFeaturesFromRun | Man page Source code |
| fetchPrecursorsInfo | Man page Source code |
| filenamesFromMZML | Man page Source code |
| filenamesFromOSW | Man page Source code |
| getAlignObj | Man page Source code |
| getAlignObjs | Man page Source code |
| getAlignedFigs | Man page Source code |
| getAlignedIndices | Man page Source code |
| getAnalytesQuery | Man page Source code |
| getBaseGapPenaltyCpp | Man page Source code |
| getChromSimMatCpp | Man page Source code |
| getChromatogramIndices | Man page Source code |
| getFeatures | Man page Source code |
| getFeaturesQuery | Man page Source code |
| getGlobalAlignMaskCpp | Man page Source code |
| getGlobalAlignment | Man page Source code |
| getGlobalFits | Man page Source code |
| getLOESSfit | Man page Source code |
| getLinearfit | Man page Source code |
| getMZMLpointers | Man page Source code |
| getMappedRT | Man page Source code |
| getMultipeptide | Man page Source code |
| getOswAnalytes | Man page Source code |
| getOswFiles | Man page Source code |
| getPrecursorByID | Man page Source code |
| getPrecursors | Man page Source code |
| getPrecursorsQuery | Man page Source code |
| getPrecursorsQueryID | Man page Source code |
| getQuery | Man page Source code |
| getRSE | Man page Source code |
| getRefRun | Man page Source code |
| getRunNames | Man page Source code |
| getSeqSimMatCpp | Man page Source code |
| getXICs | Man page Source code |
| getXICs4AlignObj | Man page Source code |
| mapIdxToTime | Man page Source code |
| mapPrecursorToChromIndices | Man page Source code |
| mappedRTfromAlignObj | Man page Source code |
| mergeOswAnalytes_ChromHeader | Man page Source code |
| multipeptide_DIAlignR | Man page |
| oswFiles_DIAlignR | Man page |
| pickNearestFeature | Man page Source code |
| plotAlignedAnalytes | Man page Source code |
| plotAlignmentPath | Man page Source code |
| plotAnalyteXICs | Man page Source code |
| plotSingleAlignedChrom | Man page Source code |
| plotXICgroup | Man page Source code |
| readChromatogramHeader | Man page Source code |
| setAlignmentRank | Man page Source code |
| smoothSingleXIC | Man page Source code |
| smoothXICs | Man page Source code |
| testAlignObj | Source code |
| trimXICs | Man page Source code |
| updateFileInfo | Man page Source code |
| writeTables | Man page Source code |
