DeconRNASeq: Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data

DeconSeq is an R package for deconvolution of heterogeneous tissues based on mRNA-Seq data. It modeled expression levels from heterogeneous cell populations in mRNA-Seq as the weighted average of expression from different constituting cell types and predicted cell type proportions of single expression profiles.

AuthorTing Gong <tinggong@gmail.com> Joseph D. Szustakowski <joseph.szustakowski@novartis.com>
Date of publicationNone
MaintainerTing Gong <tinggong@gmail.com>
LicenseGPL-2
Version1.16.0

View on Bioconductor

Functions

all.datasets Man page
array.proportions Man page
array.signatures Man page
condplot Man page
datasets Man page
decon.bootstrap Man page
DeconRNASeq Man page
DeconRNASeq_package Man page
DeconRNASeq.package Man page
fraction Man page
liver_kidney Man page
multiplot Man page
multi_tissue Man page
proportions Man page
rmse Man page
signatures Man page
x.data Man page
x.signature Man page
x.signature.filtered Man page
x.signature.filtered.optimal Man page

Files

DeconRNASeq/.BBSoptions
DeconRNASeq/DESCRIPTION
DeconRNASeq/NAMESPACE
DeconRNASeq/R
DeconRNASeq/R/DeconRNASeq.R DeconRNASeq/R/decon.bootstrap.R DeconRNASeq/R/multiplot.R DeconRNASeq/R/rmse.R
DeconRNASeq/build
DeconRNASeq/build/vignette.rds
DeconRNASeq/data
DeconRNASeq/data/datalist
DeconRNASeq/data/liver_kidney.rda
DeconRNASeq/data/liver_kidney_ascii.rda
DeconRNASeq/data/multi_tissue.rda
DeconRNASeq/data/rat_liver_brain.rda
DeconRNASeq/demo
DeconRNASeq/demo/00Index
DeconRNASeq/demo/DeconRNASeq.R
DeconRNASeq/inst
DeconRNASeq/inst/doc
DeconRNASeq/inst/doc/DeconRNASeq.R
DeconRNASeq/inst/doc/DeconRNASeq.Rnw
DeconRNASeq/inst/doc/DeconRNASeq.pdf
DeconRNASeq/man
DeconRNASeq/man/DeconRNASeq-package.Rd DeconRNASeq/man/DeconRNASeq.Rd DeconRNASeq/man/all.datasets.Rd DeconRNASeq/man/array.proportions.Rd DeconRNASeq/man/array.signatures.Rd DeconRNASeq/man/condplot.Rd DeconRNASeq/man/datasets.Rd DeconRNASeq/man/decon.bootstrap.Rd DeconRNASeq/man/fraction.Rd DeconRNASeq/man/liver_kidney.Rd DeconRNASeq/man/multi_tissue.Rd DeconRNASeq/man/multiplot.Rd DeconRNASeq/man/proportions.Rd DeconRNASeq/man/rmse.Rd DeconRNASeq/man/signatures.Rd DeconRNASeq/man/x.data.Rd DeconRNASeq/man/x.signature.Rd DeconRNASeq/man/x.signature.filtered.Rd DeconRNASeq/man/x.signature.filtered.optimal.Rd
DeconRNASeq/vignettes
DeconRNASeq/vignettes/DeconRNASeq.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.