DeconRNASeq: Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data

DeconSeq is an R package for deconvolution of heterogeneous tissues based on mRNA-Seq data. It modeled expression levels from heterogeneous cell populations in mRNA-Seq as the weighted average of expression from different constituting cell types and predicted cell type proportions of single expression profiles.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("DeconRNASeq")
AuthorTing Gong <tinggong@gmail.com> Joseph D. Szustakowski <joseph.szustakowski@novartis.com>
Bioconductor views DifferentialExpression
Date of publicationNone
MaintainerTing Gong <tinggong@gmail.com>
LicenseGPL-2
Version1.18.0

View on Bioconductor

Functions

all.datasets Man page
array.proportions Man page
array.signatures Man page
condplot Man page
datasets Man page
decon.bootstrap Man page
DeconRNASeq Man page
DeconRNASeq_package Man page
DeconRNASeq.package Man page
fraction Man page
liver_kidney Man page
multiplot Man page
multi_tissue Man page
proportions Man page
rmse Man page
signatures Man page
x.data Man page
x.signature Man page
x.signature.filtered Man page
x.signature.filtered.optimal Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.