DeconRNASeq: Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data

DeconSeq is an R package for deconvolution of heterogeneous tissues based on mRNA-Seq data. It modeled expression levels from heterogeneous cell populations in mRNA-Seq as the weighted average of expression from different constituting cell types and predicted cell type proportions of single expression profiles.

AuthorTing Gong <tinggong@gmail.com> Joseph D. Szustakowski <joseph.szustakowski@novartis.com>
Date of publicationNone
MaintainerTing Gong <tinggong@gmail.com>
LicenseGPL-2
Version1.16.0

View on Bioconductor

Files in this package

DeconRNASeq/.BBSoptions
DeconRNASeq/DESCRIPTION
DeconRNASeq/NAMESPACE
DeconRNASeq/R
DeconRNASeq/R/DeconRNASeq.R DeconRNASeq/R/decon.bootstrap.R DeconRNASeq/R/multiplot.R DeconRNASeq/R/rmse.R
DeconRNASeq/build
DeconRNASeq/build/vignette.rds
DeconRNASeq/data
DeconRNASeq/data/datalist
DeconRNASeq/data/liver_kidney.rda
DeconRNASeq/data/liver_kidney_ascii.rda
DeconRNASeq/data/multi_tissue.rda
DeconRNASeq/data/rat_liver_brain.rda
DeconRNASeq/demo
DeconRNASeq/demo/00Index
DeconRNASeq/demo/DeconRNASeq.R
DeconRNASeq/inst
DeconRNASeq/inst/doc
DeconRNASeq/inst/doc/DeconRNASeq.R
DeconRNASeq/inst/doc/DeconRNASeq.Rnw
DeconRNASeq/inst/doc/DeconRNASeq.pdf
DeconRNASeq/man
DeconRNASeq/man/DeconRNASeq-package.Rd DeconRNASeq/man/DeconRNASeq.Rd DeconRNASeq/man/all.datasets.Rd DeconRNASeq/man/array.proportions.Rd DeconRNASeq/man/array.signatures.Rd DeconRNASeq/man/condplot.Rd DeconRNASeq/man/datasets.Rd DeconRNASeq/man/decon.bootstrap.Rd DeconRNASeq/man/fraction.Rd DeconRNASeq/man/liver_kidney.Rd DeconRNASeq/man/multi_tissue.Rd DeconRNASeq/man/multiplot.Rd DeconRNASeq/man/proportions.Rd DeconRNASeq/man/rmse.Rd DeconRNASeq/man/signatures.Rd DeconRNASeq/man/x.data.Rd DeconRNASeq/man/x.signature.Rd DeconRNASeq/man/x.signature.filtered.Rd DeconRNASeq/man/x.signature.filtered.optimal.Rd
DeconRNASeq/vignettes
DeconRNASeq/vignettes/DeconRNASeq.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.