DeconRNASeq-package: package DeconRNASeq contains function "DeconRNASeq",...

In DeconRNASeq: Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data

Description

Main function "DeconRNASeq" implements an nonnegative decomposition by quadratic programming as datasets = signature*A, where "datasets" are the originally measured data matrix (e.g. genes by samples), "signature" is the signature matrix (genes by cell types) and "A" the cell type concentration matrix (cell types by samples)

Details

Package:	DeconRNASeq
Type:	Package
Version:	1.0
Date:	2012-05-25
License:	GPL version 2 or later

DeconRNASeq(datasets, signature)

Author(s)

Ting Gong [e-mail] Joseph D. Szustakowski [e-mail]

References

Gong, T., et al. (2011) Optimal Deconvolution of Transcriptional Profiling Data Using Quadratic Programming with Application to Complex Clinical Blood Samples, PLoS One, 6, e27156.

DeconRNASeq documentation built on Nov. 8, 2020, 7:51 p.m.