Description Usage Arguments Value Author(s) References

View source: R/decon.bootstrap.R

A function is used to estimate the the confidence interval for the proportions predicted by deconvolution through bootstrapping.

1 | ```
decon.bootstrap(data.set, possible.signatures, n.sig, n.iter)
``` |

`data.set` |
the data object for mixing samples |

`possible.signatures` |
a data frame providing the expression values from pure tissue samples |

`n.sig` |
the number of genes/transcripts used for estimation of proportions from our deconvolution |

`n.iter` |
the number of bootstraps for our deconvolution |

A three dimentional array to store means and 95% confidence interval

Ting Gong tinggong@gmail.com Joseph D. Szustakowski joseph.szustakowski@novartis.com

Gong, T., et al. (2011) Optimal Deconvolution of Transcriptional Profiling Data Using Quadratic Programming with Application to Complex Clinical Blood Samples, PLoS One, 6, e27156.

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