array.proportions: proportions for rat liver and brain mixing samples

In DeconRNASeq: Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data

Description

array.proportions: a data frame providing the fractions for liver and brain from the microarray GSE 19830 study

Usage

array.proportions

Format

a martix whose rows are mixing samples' name and columns are fractions from pure live and brain tissues

Author(s)

Ting Gong [e-mail] Joseph D. Szustakowski [e-mail]

Examples

data(rat_liver_brain)

Example output

Loading required package: limSolve
Loading required package: pcaMethods
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

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    'browseVignettes()'. To cite Bioconductor, see
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Attaching package: 'pcaMethods'

The following object is masked from 'package:stats':

    loadings

Loading required package: ggplot2

Attaching package: 'ggplot2'

The following object is masked from 'package:limSolve':

    resolution

Loading required package: grid

DeconRNASeq documentation built on Nov. 8, 2020, 7:51 p.m.