Man pages for DiffBind
Differential Binding Analysis of ChIP-Seq Peak Data
| dba | Construct a DBA object |
| dba.analyze | Perform differential binding affinity analysis |
| dba.blacklist | Apply blacklists and/or greylists to peaks (and generate... |
| dba.contrast | Set up contrasts for differential binding affinity analysis |
| dba.count | Count reads in binding site intervals |
| dba.load | load DBA object |
| dba.mask | Derive a mask to define a subset of peaksets or sites for a... |
| dba.normalize | Specify parameters for normalizing a dataset; calculate... |
| dba.overlap | Compute binding site overlaps (occupancy analysis) |
| dba.peakset | Add a peakset to, or retrieve a peakset from, a DBA object |
| dba.plotBox | Boxplots |
| dba.plotHeatmap | Draw a binding site heatmap |
| dba.plotMA | Generate MA and scatter plots of differential binding... |
| dba.plotPCA | PCA plot |
| dba.plotVenn | Draw 2-way, 3-way, or 4-way Venn diagrams of overlaps |
| dba.plotVolcano | Generate volcano plots of differential binding analysis... |
| dba.report | Generate a report for a differential binding affinity... |
| dba.save | save DBA object |
| dba.show | List attributes of peaksets of contrasts associated with a... |
| DiffBind3 | Differences between DiffBind 3.0 and earlier versions |
| DiffBind-globals | Constant variables used in DiffBind package |
| DiffBind-package | Differential Binding Analysis of ChIP-seq peaksets |
| print.DBA | Standard S3 methods for DBA object |
| tamoxifen | Tamoxifen resistance dataset used for DBA examples |
