Files in DiffBind
Differential Binding Analysis of ChIP-Seq Peak Data

NAMESPACE
DESCRIPTION
R/analyze.R R/parallel.R R/DBA.R R/core.R R/io.R R/contrast.R R/counts.R R/RcppExports.R R/helper.R R/cpp_wrapper.R R/utils.R
inst/CITATION
inst/NEWS.Rd
inst/doc/DiffBind.R inst/doc/DiffBind.pdf
inst/doc/DiffBind.Rnw
inst/extra/tamoxifen.csv
inst/extra/tamoxifen_GEO.csv
inst/extra/config.csv
inst/extra/tamoxifen_allfields.csv
inst/extra/tamoxifen_GEO.R
inst/extra/peaks/T47D_ER_1.bed.gz
inst/extra/peaks/BT474_ER_2.bed.gz
inst/extra/peaks/ZR75_ER_1.bed.gz
inst/extra/peaks/MCF7_ER_2.bed.gz
inst/extra/peaks/TAMR_ER_1.bed.gz
inst/extra/peaks/TAMR_ER_2.bed.gz
inst/extra/peaks/MCF7_ER_1.bed.gz
inst/extra/peaks/ZR75_ER_2.bed.gz
inst/extra/peaks/BT474_ER_1.bed.gz
inst/extra/peaks/MCF7_ER_3.bed.gz
inst/extra/peaks/T47D_ER_2.bed.gz
inst/extra/testdata/test_sampleSheet_comment_char.csv
inst/extra/testdata/bed_with_header.bed.gz
inst/extra/testdata/test_sampleSheet_Spaces.csv
inst/extra/testdata/raw_with_header.raw.gz
inst/extra/testdata/bed_without_header.bed.gz
inst/extra/testdata/test_sampleSheet_Spaces.xlsx
inst/extra/testdata/raw_without_header.raw.gz
man/dba.load.Rd man/dba.plotBox.Rd man/DiffBind-package.Rd man/tamoxifen.Rd man/dba.show.Rd man/dba.contrast.Rd man/dba.plotMA.Rd man/dba.mask.Rd man/dba.report.Rd man/dba.overlap.Rd man/dba.plotHeatmap.Rd man/dba.save.Rd man/dba.peakset.Rd man/dba.analyze.Rd man/dba.plotVolcano.Rd man/dba.count.Rd man/dba.plotVenn.Rd man/dba.Rd man/dba.plotPCA.Rd man/DiffBind-globals.Rd man/print.DBA.Rd
src/reader.h
src/RcppExports.cpp
src/intervalNode.h
src/util.h
src/bedReader.cpp
src/densitySet.cpp
src/iBucket.cpp
src/iBucket.h
src/Makevars
src/bedReader.h
src/interval.h
src/intervalDensity.h
src/sequence.h
src/nodeGroup.cpp
src/intervalNode.cpp
src/Makevars.win
src/intervalSet.cpp
src/croi_func.h
src/bamReader.h
src/nodeGroup.h
src/intervalSet.h
src/util.cpp
src/intervalTree.cpp
src/intervalDensity.cpp
src/croi_func.cpp
src/mergeOne.c
src/bamReader.cpp
src/peakOrder.cpp
src/densitySet.h
src/intervalTree.h
src/bitBucket.h
src/reader.cpp
src/sequence.cpp
src/bitBucket.cpp
src/interval.cpp
src/merge.cpp
src/croi_main.cpp
tests/testthat.R tests/testthat/test_readPeaks.R tests/testthat/test_loadSampleSheet.R tests/testthat/test_cmerge.R tests/testthat/test_csort.R
build/vignette.rds
data/tamoxifen_counts.rda
data/tamoxifen_peaks.rda
data/datalist
data/tamoxifen_analysis.rda
vignettes/DiffBind.Rnw
vignettes/DiffBind.bib
DiffBind documentation built on Nov. 17, 2017, 12:27 p.m.