tamoxifen: Tamoxifen resistance dataset used for DBA examples

In DiffBind: Differential Binding Analysis of ChIP-Seq Peak Data

Description

Tamoxifen resistance dataset used for DBA examples

Usage

data(tamoxifen_peaks)

data(tamoxifen_counts)

data(tamoxifen_analysis)

data(tamoxifen_greylist)

Arguments

tamoxifen_peaks	load tamoxifen resistance dataset DBA object with peak (occupancy) data
tamoxifen_counts	load tamoxifen resistance dataset DBA object with count (affinity) data. Also includes background bins counts for background normalization.
tamoxifen_analysis	load tamoxifen resistance dataset DBA object with count (affinity) data and DESeq2-based differential binding analysis results. This analysis uses a blacklists, computed greylists, background normalization, and a two-factor design.
tamoxifen_greylist	load greylist for tamoxifen dataset. Generated as shown in dba.blacklist example: dba.blacklist.

Details

The tamoxifen resistance dataset is used for the DBA vignette and man page examples.

Data used to create these objects can be downloaded at http://DiffBind.starkhome.com/.

Value

loads a DBA object named tamoxifen (or tamoxifen.greylist).

Note

The script for generating these files (GenerateDataFiles.R) is included with the package in the inst/extras directory.

Author(s)

Rory Stark

Examples

data(tamoxifen_peaks)
tamoxifen
data(tamoxifen_counts)
plot(tamoxifen)
data(tamoxifen_analysis)
dba.plotMA(tamoxifen)
data(tamoxifen_greylist)
tamoxifen.greylist$master

DiffBind documentation built on March 24, 2021, 6 p.m.