DiffBind-package: Differential Binding Analysis of ChIP-seq peaksets
In DiffBind: Differential Binding Analysis of ChIP-Seq Peak Data

Differential binding analysis of ChIP-seq peaksets

Computes differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.

Entry Points:

`dba`:	Construct a dba object
`dba.peakset`:	Add a peakset to, or retrieve a peakset from, a dba object

`dba.overlap`:	Compute binding site overlaps and/or correlations
`dba.count`:	Count reads in binding sites

`dba.contrast`:	Establish contrast(s) for analysis
`dba.analyze`:	Execute affinity analysis
`dba.report`:	Generate report for a contrast analysis

`dba.plotHeatmap`:	Heatmap plot
`dba.plotPCA`:	Principal Components plot
`dba.plotBox`:	Boxplots
`dba.plotMA`:	MA/scatter plot
`dba.plotVenn`:	Venn diagram plot
`dba.plotVolcano`:	Volcano plot

`dba.show`:	Show dba metadata
`dba.mask`:	Mask samples or sites

`dba.save`:	Save dba object
`dba.load`:	Load dba object