dba.save: save DBA object

In DiffBind: Differential Binding Analysis of ChIP-Seq Peak Data

Description

Writes out DBA object

Usage

dba.save(DBA, file='DBA', dir='.', pre='dba_', ext='RData', 
         bRemoveAnalysis=FALSE, bRemoveBackground=FALSE,
         bCompress=FALSE)

Arguments

DBA	DBA object

file	main filename
dir	directory to save model in
pre	string to pre-pend to filename
ext	extensions to use
bRemoveAnalysis	if TRUE, will remove the global DESeq2 and/or edgeR analysis objects. The analysis results will be retained. If the analysis objects are required after re-loading, they will be automatically re-generated.
bRemoveBackground	if TRUE, will remove the global binned background counts used for normalization. Any normalization factors calculated using these counts will be retained. If the the normalization factors need to be re-re-calculated after re-loading, the binned background counts will be automatically re-generated.
bCompress	logical indicating saved DBA object should be compressed as much as possible.

Value

string containing full path and filename.

Author(s)

Rory Stark

See Also

dba.load

Examples

## Not run: 
data(tamoxifen_peaks)
savefile <- dba.save(tamoxifen,'tamoxifenPeaks')
savefile
rm(tamoxifen)
tamoxifen <- dba.load('tamoxifenPeaks')
unlink(savefile)

## End(Not run)

DiffBind documentation built on March 24, 2021, 6 p.m.