Man pages for ENVISIONQuery
Retrieval from the ENVISION bioinformatics data portal into R
| ENVISIONQuery | Launch a query against Envision, a web online query system... |
| ENVISIONQuery.chunk | Retrieves a set of unique matches for a given ID list. |
| ENVISIONQuery.loop | Perform queries in chunks to comply with potential... |
| ENVISIONQuery-package | ENVISIONQuery. |
| ENVISIONServices | Registry of available Envision services... |
| formatIdMap | Convert the Enfin xml ID conversion results file into the... |
| formatIntact | Convert the EnXML IntAct service results file into the... |
| formatPicr | Convert the EnXML PICR service results file into the protein... |
| formatReactome | Convert the EnXML PICR service results file into the protein... |
| getFormatter | Get the formatting function for a given tool... |
| getIdEntries | Retrieve a set of all ID entries... |
| getIdMatchInfo | Retrieve the set of match pairs from the 'Entry' node of the... |
| getInputIdEntries | Retrieve a set of input ID entries... |
| getInputTypes | Get the list of available input types for a given tool. |
| getIntactMatchInfo | Retrieve IntAct match info from the 'Entry' node of the Enfin... |
| getMerger | Get the merging function for a given tool. |
| getPicrMatchInfo | Retrieve PICR match info from the 'Entry' node of the Enfin... |
| getPositiveResultSetIDs | Retrieve a set of positive query result references from the... |
| getReactomeMatchInfo | Retrieve Reactome pathway match info from the 'Entry' node of... |
| getService | Get the service handler using it's name... |
| getServiceClient | Get the Web Service client finction handler for a given... |
| getServiceNames | Get the names of available Envision services... |
| getServiceOptions | Get default service options. |
| getServices | Get available services... |
| getTool | Get the tool handler of a given service using the tool... |
| getToolNames | Get the names of available tools for a given Envision... |
| jgetOptions | Convert options list into the character vector. |
| mergeFrameList | Merges the data frames representing the partial query results... |
| mergeMatchRows | Merge a set of rows with non-unique values in a given set of... |
| progressMsg | Display the task progress message. |
| registerServices | Register available Envision services... |
| toChunks | Convert the ID set into the list of ID subsets. |
