getReactomeMatchInfo: Retrieve Reactome pathway match info from the 'Entry' node of...
In ENVISIONQuery: Retrieval from the ENVISION bioinformatics data portal into R
Description
Usage
Arguments
Value
Author(s)
View source: R/formatReactome.R
Description
Retrieve Reactome pathway match info from the 'Entry' node of the Enfin xml document.
Usage
1
getReactomeMatchInfo(entry, positiveResultIDs)
Arguments
entry
The 'Entry' node of the Enfin xml document.
positiveResultIDs
Set of 'ID' nodes of the Enfin xml document which contain the pair match information.
Value
The array with at least three columns, the first containing the source ID set, the second containing
the pathway description and the third containing the link to Reactome web page for a given pathway.
If 'enfin-reactome-add-coverage' option is set to 'true' then two extra columns
are added: the first for pathway coverage number, and the second for the total protein count per pathway.
Author(s)
Alex Lisovich, Roger Day
ENVISIONQuery documentation built on Nov. 8, 2020, 5:25 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
View source: R/formatReactome.R
Description
Retrieve Reactome pathway match info from the 'Entry' node of the Enfin xml document.
Usage
1 | getReactomeMatchInfo(entry, positiveResultIDs)
|
Arguments
entry |
The 'Entry' node of the Enfin xml document. |
positiveResultIDs |
Set of 'ID' nodes of the Enfin xml document which contain the pair match information. |
Value
The array with at least three columns, the first containing the source ID set, the second containing the pathway description and the third containing the link to Reactome web page for a given pathway. If 'enfin-reactome-add-coverage' option is set to 'true' then two extra columns are added: the first for pathway coverage number, and the second for the total protein count per pathway.
Author(s)
Alex Lisovich, Roger Day
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.