getIdEntries: Retrieve a set of all ID entries...
In ENVISIONQuery: Retrieval from the ENVISION bioinformatics data portal into R
Description
Usage
Arguments
Value
Author(s)
Description
Retrieve a set of all ID entries
Usage
1
2
getIdEntries(entry, nodeName="molecule", primaryAttr="id",
dataAttrs=c("id", "db"))
Arguments
entry
The 'Entry' node of the Enfin xml document.
nodeName
The name identifying the node containing the ID info. Default is 'molecule'.
primaryAttr
The name of attribute which is used as row names of the output data frame.
Default is 'id' standing for gene ID
dataAttrs
The names of the attributes which values are to be retrieved.
Default is c('id','db'), i.e. gene ID and data base source.
Value
Data frame with a single column containing all (input and output) IDs.
with row names corresponding to the Enfin xml reference names.
Author(s)
Alex Lisovich, Roger Day
ENVISIONQuery documentation built on Nov. 8, 2020, 5:25 p.m.
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Description Usage Arguments Value Author(s)
Description
Retrieve a set of all ID entries
Usage
1 2 | getIdEntries(entry, nodeName="molecule", primaryAttr="id",
dataAttrs=c("id", "db"))
|
Arguments
entry |
The 'Entry' node of the Enfin xml document. |
nodeName |
The name identifying the node containing the ID info. Default is 'molecule'. |
primaryAttr |
The name of attribute which is used as row names of the output data frame. Default is 'id' standing for gene ID |
dataAttrs |
The names of the attributes which values are to be retrieved. Default is c('id','db'), i.e. gene ID and data base source. |
Value
Data frame with a single column containing all (input and output) IDs. with row names corresponding to the Enfin xml reference names.
Author(s)
Alex Lisovich, Roger Day
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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