getIntactMatchInfo: Retrieve IntAct match info from the 'Entry' node of the Enfin...

Description Usage Arguments Value Author(s)

View source: R/formatIntact.R

Description

Retrieve IntAct match info from the 'Entry' node of the Enfin xml document.

Usage

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getIntactMatchInfo(entry, positiveResultIDs,
    participant.keyword="participant", primary.ref.keyword="xrefs")

Arguments

entry

The 'Entry' node of the Enfin xml document.

positiveResultIDs

Set of 'ID' nodes of the Enfin xml document which contain the pair match information.

participant.keyword

The keyword identifying the match related information within the match top node. Default is "participant".

primary.ref.keyword

The keyword identifying the IntAct ID related information. Default is 'xrefs'.

Value

The array consisting of three columns, the first containing the source ID set, and the second containing the ID set the source IDs are interacting with and the thirfd containing IntAct interaction ID.

Author(s)

Alex Lisovich, Roger Day


ENVISIONQuery documentation built on Nov. 1, 2018, 4:26 a.m.