Man pages for ENVISIONQuery
Retrieval from the ENVISION bioinformatics data portal into R

ENVISIONQueryLaunch a query against Envision, a web online query system...
ENVISIONQuery.chunkRetrieves a set of unique matches for a given ID list.
ENVISIONQuery.loopPerform queries in chunks to comply with potential...
ENVISIONQuery-packageENVISIONQuery.
ENVISIONServicesRegistry of available Envision services...
formatIdMapConvert the Enfin xml ID conversion results file into the...
formatIntactConvert the EnXML IntAct service results file into the...
formatPicrConvert the EnXML PICR service results file into the protein...
formatReactomeConvert the EnXML PICR service results file into the protein...
getFormatterGet the formatting function for a given tool...
getIdEntriesRetrieve a set of all ID entries...
getIdMatchInfoRetrieve the set of match pairs from the 'Entry' node of the...
getInputIdEntriesRetrieve a set of input ID entries...
getInputTypesGet the list of available input types for a given tool.
getIntactMatchInfoRetrieve IntAct match info from the 'Entry' node of the Enfin...
getMergerGet the merging function for a given tool.
getPicrMatchInfoRetrieve PICR match info from the 'Entry' node of the Enfin...
getPositiveResultSetIDsRetrieve a set of positive query result references from the...
getReactomeMatchInfoRetrieve Reactome pathway match info from the 'Entry' node of...
getServiceGet the service handler using it's name...
getServiceClientGet the Web Service client finction handler for a given...
getServiceNamesGet the names of available Envision services...
getServiceOptionsGet default service options.
getServicesGet available services...
getToolGet the tool handler of a given service using the tool...
getToolNamesGet the names of available tools for a given Envision...
jgetOptionsConvert options list into the character vector.
mergeFrameListMerges the data frames representing the partial query results...
mergeMatchRowsMerge a set of rows with non-unique values in a given set of...
progressMsgDisplay the task progress message.
registerServicesRegister available Envision services...
toChunksConvert the ID set into the list of ID subsets.
ENVISIONQuery documentation built on Nov. 17, 2017, 10:34 a.m.