Files in FELLA
Interpretation and enrichment for metabolomics data
README.md
FELLA documentation built on Nov. 8, 2020, 6:57 p.m.
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/input.sample.RData
data/FELLA.sample.RData
R/loadKEGGdata.R
R/enrich.R
R/plotLegend.R
R/runHypergeom.R
R/plotGraph.R
R/doc-package.R
R/AllArguments.R
R/runDiffusion.R
R/plotBipartite.R
R/AllMethods.R
R/get-.R
R/generateEnzymesTable.R
R/doc-data.R
R/exportResults.R
R/runPagerank.R
R/list-.R
R/launchApp.R
R/generateResultsGraph.R
R/buildGraphFromKEGGREST.R
R/addGOToGraph.R
R/defineCompounds.R
R/AllClasses.R
R/generateResultsTable.R
R/buildDataFromGraph.R
R/is-.R
vignettes/shiny4.png
vignettes/bibliography_zebrafish.bib
vignettes/workflow3.eps
vignettes/zebrafish.Rmd
vignettes/bibliography.bib
vignettes/FELLA.Rnw
vignettes/kegggraph.eps
vignettes/shiny1.png
vignettes/PR_contour.eps
vignettes/shiny2.png
vignettes/HD_contour.eps
vignettes/quickstart.Rmd
vignettes/shiny3.png
vignettes/musmusculus.Rmd
vignettes/bibliography_mouse.bib
man/plotBipartite.Rd
man/D.pagerank.Rd
man/input.sample.Rd
man/U.pagerank.Rd
man/listApprox.Rd
man/plotLegend.Rd
man/infere.con2ec.Rd
man/sanitise.Rd
man/enrich-funs.Rd
man/getName.Rd
man/listMethods.Rd
man/FELLA.USER.Rd
man/getPscores.Rd
man/D.hypergeom.Rd
man/getPvaluesSize.Rd
man/FELLA.Rd
man/getStatus.Rd
man/U.userinput.Rd
man/D.diffusion.Rd
man/FELLA.DATA.Rd
man/largestcc.Rd
man/U.diffusion.Rd
man/mytriangle.Rd
man/getMatrix.Rd
man/listInternalDatabases.Rd
man/getSums.Rd
man/getCom.Rd
man/getInput.Rd
man/is.FELLA.DATA.Rd
man/getExcluded.Rd
man/getInfo.Rd
man/U.hypergeom.Rd
man/is.FELLA.USER.Rd
man/FELLA.sample.Rd
man/dot-params.Rd
man/checkArguments.Rd
man/D.keggdata.Rd
man/launchApp.Rd
man/getBackground.Rd
man/data-funs.Rd
man/listCategories.Rd
man/export-funs.Rd
man/getValid.Rd
man/getGraph.Rd
tests/testthat.R
tests/testthat/test-felladataCreation.R
tests/testthat/test-databaseCreation.R
tests/testthat/test-extractors.R
tests/testthat/test-enrich.R
inst/CITATION
inst/doc/quickstart.html
inst/doc/zebrafish.Rmd
inst/doc/FELLA.Rnw
inst/doc/quickstart.R
inst/doc/quickstart.Rmd
inst/doc/musmusculus.pdf
inst/doc/musmusculus.R
inst/doc/zebrafish.R
inst/doc/musmusculus.Rmd
inst/doc/FELLA.pdf
inst/doc/zebrafish.pdf
inst/doc/FELLA.R
inst/shiny/ui.R
inst/shiny/server.R
inst/shiny/global.R
inst/shiny/www/creb_upc.png
inst/shiny/www/b2slab_small.png
inst/shiny/www/b2slab.png
inst/shiny/examples/input_1_compounds.list
inst/shiny/examples/input_3_metaboanalyst.list
inst/shiny/examples/input_2_compounds.list
inst/shiny/examples/sampleTex/samplePR.log
inst/shiny/examples/sampleTex/samplePR.aux
inst/shiny/examples/sampleTex/sample.tex
inst/shiny/examples/sampleTex/sample.log
inst/shiny/examples/sampleTex/sample.aux
inst/shiny/examples/sampleTex/samplePR.tex
inst/script/citations_formatted.txt
inst/script/generateSampleData.R
inst/script/reindentRd.R
