API for FunChIP
Clustering and Alignment of ChIP-Seq peaks based on their shapes
| Global functions | |
|---|---|
| FunChIP | Man page |
| FunChIP-package | Man page |
| GR | Man page |
| GR100 | Man page |
| bending_index | Man page Source code |
| choice_lambda_spline | Source code |
| choose.k.GRange | Source code |
| choose_d | Source code |
| choose_k | Man page |
| choose_k,GRanges-method | Man page |
| choose_k-method | Man page |
| cluster.GRange | Source code |
| cluster_peak | Man page |
| cluster_peak,GRanges-method | Man page |
| cluster_peak-method | Man page |
| compute_average_distance | Source code |
| compute_distance | Source code |
| compute_distance_with_shift | Source code |
| compute_fragments_length | Man page Source code |
| compute_silhouette | Source code |
| convert_vectors_to_list | Source code Source code |
| define_new_grid | Source code |
| definition_spline | Source code |
| distance_peak | Man page Source code |
| distance_point_line | Source code |
| extension | Source code |
| extension_with_min | Source code |
| peaks | Man page |
| peaks.data | Man page |
| peaks.data.classified | Man page |
| peaks.data.classified.scaled | Man page |
| peaks.data.cluster | Man page |
| peaks.data.cluster.scaled | Man page |
| peaks.data.smooth | Man page |
| peaks.data.smooth.scaled | Man page |
| peaks.data.summit | Man page |
| peaks.data.summit.scaled | Man page |
| pileup.GRange | Source code |
| pileup_peak | Man page |
| pileup_peak,GRanges-method | Man page |
| pileup_peak-method | Man page |
| plot.GRange | Source code |
| plot_peak | Man page |
| plot_peak,GRanges-method | Man page |
| plot_peak-method | Man page |
| plot_row_data | Source code |
| silhouette_plot | Man page Source code |
| smooth.GRange | Source code |
| smooth_peak | Man page |
| smooth_peak,GRanges-method | Man page |
| smooth_peak-method | Man page |
| summit.GRange | Source code |
| summit_peak | Man page |
| summit_peak,GRanges-method | Man page |
| summit_peak-method | Man page |
| unlist.counts | Source code Source code Source code Source code |
