GR100: Peaks of a ChIP-seq experiment
In FunChIP: Clustering and Alignment of ChIP-Seq peaks based on their shapes
Description
Usage
Format
References
Examples
Description
The data-set GR100 contains 100 enriched regions on chromosome 18 of the transcription
factor c-Myc on murine cells, obtained by calling peaks with MACS [Zhang et al., 2008] on
a ChIP-Seq experiment. The genomic coordinates of the peaks
are stored in the GRanges object GR100.
Usage
1
data("GR100")
Format
GRanges object with 100 ranges and 0 metadata columns.
References
Zhang et al., 2008. Model-based Analysis of ChIP-Seq (MACS). Genome Biology, vol. 9 (9) pp. R137.
Examples
1
2
FunChIP documentation built on Nov. 8, 2020, 4:50 p.m.
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Description Usage Format References Examples
Description
The data-set GR100 contains 100 enriched regions on chromosome 18 of the transcription
factor c-Myc on murine cells, obtained by calling peaks with MACS [Zhang et al., 2008] on
a ChIP-Seq experiment. The genomic coordinates of the peaks
are stored in the GRanges object GR100.
Usage
1 | data("GR100")
|
Format
GRanges object with 100 ranges and 0 metadata columns.
References
Zhang et al., 2008. Model-based Analysis of ChIP-Seq (MACS). Genome Biology, vol. 9 (9) pp. R137.
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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