API for FunChIP
Clustering and Alignment of ChIP-Seq peaks based on their shapes

Global functions
FunChIP Man page
FunChIP-package Man page
GR Man page
GR100 Man page
bending_index Man page Source code
choice_lambda_spline Source code
choose.k.GRange Source code
choose_d Source code
choose_k Man page
choose_k,GRanges-method Man page
choose_k-method Man page
cluster.GRange Source code
cluster_peak Man page
cluster_peak,GRanges-method Man page
cluster_peak-method Man page
compute_average_distance Source code
compute_distance Source code
compute_distance_with_shift Source code
compute_fragments_length Man page Source code
compute_silhouette Source code
convert_vectors_to_list Source code Source code
define_new_grid Source code
definition_spline Source code
distance_peak Man page Source code
distance_point_line Source code
extension Source code
extension_with_min Source code
peaks Man page
peaks.data Man page
peaks.data.classified Man page
peaks.data.classified.scaled Man page
peaks.data.cluster Man page
peaks.data.cluster.scaled Man page
peaks.data.smooth Man page
peaks.data.smooth.scaled Man page
peaks.data.summit Man page
peaks.data.summit.scaled Man page
pileup.GRange Source code
pileup_peak Man page
pileup_peak,GRanges-method Man page
pileup_peak-method Man page
plot.GRange Source code
plot_peak Man page
plot_peak,GRanges-method Man page
plot_peak-method Man page
plot_row_data Source code
silhouette_plot Man page Source code
smooth.GRange Source code
smooth_peak Man page
smooth_peak,GRanges-method Man page
smooth_peak-method Man page
summit.GRange Source code
summit_peak Man page
summit_peak,GRanges-method Man page
summit_peak-method Man page
unlist.counts Source code Source code Source code Source code
FunChIP documentation built on Nov. 1, 2018, 3:43 a.m.