Man pages for FunChIP
Clustering and Alignment of ChIP-Seq peaks based on their shapes
| bending_index | The elbow rule to define the proper number of clusters. |
| choose_k-method | Choice of the final classification of peaks |
| cluster_peak-method | Clustering the peaks with the k-mean alignment algorithm |
| compute_fragments_length | Computing the length of the fragments in the .bam file. |
| distance_peak | Computing distance matrices among spline-smoothed peaks and... |
| FunChIP-package | Clustering and Alignment of ChIP-Seq peaks based on their... |
| GR100 | Peaks of a ChIP-seq experiment |
| peaks | Coverage of a ChIP-Seq experiment |
| pileup_peak-method | Computing read counts on a GRanges object. |
| plot_peak-method | Plotting the peaks. |
| silhouette_plot | Return the silhouette index for clustered peaks |
| smooth_peak-method | Spline smoothing of the peak |
| summit_peak-method | Finding the summits of the peaks of the GRanges object |
