|bending_index||The elbow rule to define the proper number of clusters.|
|choose_k-method||Choice of the final classification of peaks|
|cluster_peak-method||Clustering the peaks with the k-mean alignment algorithm|
|compute_fragments_length||Computing the length of the fragments in the .bam file.|
|distance_peak||Computing distance matrices among spline-smoothed peaks and...|
|FunChIP-package||Clustering and Alignment of ChIP-Seq peaks based on their...|
|GR100||Peaks of a ChIP-seq experiment|
|peaks||Coverage of a ChIP-Seq experiment|
|pileup_peak-method||Computing read counts on a GRanges object.|
|plot_peak-method||Plotting the peaks.|
|silhouette_plot||Return the silhouette index for clustered peaks|
|smooth_peak-method||Spline smoothing of the peak|
|summit_peak-method||Finding the summits of the peaks of the GRanges object|
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