API for GOSim
Computation of functional similarities between GO terms and gene products; GO enrichment analysis
| Global functions | |
|---|---|
| GOGraph | Man page Source code |
| GOenrichment | Man page Source code |
| IC | Man page |
| ICshumanBPall | Man page |
| ICshumanCCall | Man page |
| ICshumanMFall | Man page |
| analyzeCluster | Man page |
| calc.diffusion.kernel | Man page Source code |
| calcICs | Man page Source code |
| calcTermSim | Man page Source code Source code |
| classificationModelSignalTrans_dme | Man page |
| classificationModelSignalTrans_hsa | Man page |
| classificationModel_dme | Man page |
| evaluateClustering | Man page Source code |
| filterGO | Man page Source code |
| getAncestors | Man page Source code |
| getChildren | Man page Source code |
| getDensityFactor | Man page Source code |
| getDepthFactor | Man page Source code |
| getDisjAnc | Man page Source code |
| getDisjCommAnc | Man page Source code |
| getDisjCommAncSim | Man page Source code |
| getEnrichedSim | Man page Source code |
| getGIC | Source code |
| getGOGraph | Man page Source code |
| getGOGraphsGenes | Man page Source code |
| getGOInfo | Man page Source code |
| getGSim | Man page Source code |
| getGeneFeatures | Man page Source code |
| getGeneFeatures.internal | Source code |
| getGeneFeaturesPrototypes | Man page Source code |
| getGeneSim | Man page Source code |
| getGeneSimPrototypes | Man page Source code |
| getMinimumSubsumer | Man page Source code |
| getOffsprings | Man page Source code |
| getParents | Man page Source code |
| getTermSim | Man page Source code |
| getWeightedDotSim | Source code |
| initialize | Man page Source code |
| internal | Man page |
| load.diffusion.kernel | Man page Source code |
| norm | Man page Source code |
| normalize.kernel | Source code |
| pca | Man page Source code |
| precomputeTermSims | Man page Source code |
| selectPrototypes | Man page Source code |
| setEnrichmentFactors | Man page Source code |
| setEvidenceLevel | Man page Source code |
| setOntology | Man page Source code |
