calc.diffusion.kernel | Calculation and loading of diffusion kernel matrices |
calcICs | Calculate information contents of GO terms. |
evaluateClustering | Evaluate a given grouping of genes or GO terms. |
filterGO | Filter GO. |
getAncestors | get list of ALL ancestors associated to each GO term |
getChildren | Get a list of all direct children of each GO term. |
getDisjCommAnc | Get disjoint common ancestors. |
getGeneFeatures | Get simple feature vector representation of genes |
getGeneFeaturesPrototypes | Get feature vector representation of genes relative to... |
getGeneSim | Compute functional similarity for genes |
getGeneSimPrototypes | Compute functional similarity of genes with respect to a... |
getGOGraph | (1) Get GO graph with specified GO terms at its leave; (2)... |
getGOInfo | Obtain GO terms and their description for a list of genes. |
getMinimumSubsumer | Compute minimum subsumer of two GO terms. |
getOffsprings | Get all offspring associated with one or more GO term |
getParents | Get direct parents for each GO term. |
getTermSim | Get pairwise GO term similarities. |
GOenrichment | GO enrichment analysis |
IC | Information content of GO terms |
internal | internal functions |
selectPrototypes | Heuristic selection of prototypes and dimensionality... |
setEnrichmentFactors | Set the depth and densitiy enrichment factors for GO term... |
setEvidenceLevel | Specifies to use only GO terms with given evidence codes. |
setOntology | Set an ontology as base for subsequent computations. |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.