Nevins: Intensity data for 46 Affymetrix slides with tissue samples...

Description Usage Format Source References Examples


Intensity data for 46 Affymetrix hu6800 slides with tissue samples of breast tumors. See vignette Nevins.pdf in the /scripts directory for details of the processing.




Nevins is an ExpressionSet containing the data from 46 Affymetrix chips.



Predicting the clinical status of human breast cancer by using gene expression profiles, West M, Blanchette C, Dressman H, Huang E, Ishida S, Spang R, Zuzan H, Olson JA Jr, Marks JR, and Nevins JR. Proc Natl Acad Sci U S A 98(20):11462-7 (2001)



Example output

Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package:BiocGenericsThe following objects are masked frompackage:parallel:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked frompackage:stats:

    IQR, mad, sd, var, xtabs

The following objects are masked frompackage:base:

    anyDuplicated, append,, basename, cbind, colnames,
    dirname,, duplicated, eval, evalq, Filter, Find, get, grep,
    grepl, intersect, is.unsorted, lapply, Map, mapply, match, mget,
    order, paste, pmax,, pmin,, Position, rank,
    rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: genefilter
ExpressionSet (storageMode: lockedEnvironment)
assayData: 7129 features, 46 samples 
  element names: exprs, se.exprs 
protocolData: none
  sampleNames: Nevins4 Nevins5 ... Marks223 (46 total)
  varLabels: ER.status LN.status ... ER.Status.blot (7 total)
  varMetadata: labelDescription
featureData: none
experimentData: use 'experimentData(object)'
Annotation: hu6800 

GeneMeta documentation built on Nov. 8, 2020, 7:58 p.m.