Files in GeneNetworkBuilder

GeneNetworkBuilder: a bioconductor package for building regulatory network using ChIP-chip/ChIP-seq data and Gene Expression Data

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

src/geneTree.cpp

src/geneTree.h

src/Makevars.win

src/Makevars

src/nodefilter.cpp

src/registerDynamicSymbol.c

data/ce.interactionmap.rda

data/hs.interactionmap.rda

data/ce.IDsMap.rda

data/hs.IDsMap.rda

data/hs.miRNA.map.rda

data/datalist

data/ce.miRNA.map.rda

data/ce.mapIDs.rda

data/example.data.rda

data/hs.mapIDs.rda

R/networkBuilder.R R/dataset.R R/networkFromGenes.R R/GeneNetworkBuilder.R R/browseNetwork.R R/exportNetwork.R R/applications.R

vignettes/nature.csl

vignettes/workflow.png

vignettes/bibliography.bib

vignettes/with.BioGRID.STRING.Rmd vignettes/GeneNetworkBuilder_vignettes.Rmd vignettes/GeneNetworkFromGenes.Rmd man/exportNetwork.Rd man/networkFromGenes.Rd man/GeneNetworkBuilder-package.Rd man/uniqueExprsData.Rd man/hs.miRNA.map.Rd man/browseNetwork-shiny.Rd man/hs.mapIDs.Rd man/filterNetwork.Rd man/browseNetwork.Rd man/ce.miRNA.map.Rd man/polishNetwork.Rd man/hs.IDsMap.Rd man/buildNetwork.Rd man/saveXGMML.Rd man/convertID.Rd man/ce.IDsMap.Rd man/ce.mapIDs.Rd man/example.data.Rd man/ce.interactionmap.Rd man/hs.interactionmap.Rd tests/runTests.R inst/doc/with.BioGRID.STRING.R inst/doc/with.BioGRID.STRING.Rmd inst/doc/GeneNetworkBuilder_vignettes.R inst/doc/GeneNetworkFromGenes.R inst/doc/GeneNetworkBuilder_vignettes.Rmd

inst/doc/GeneNetworkFromGenes.html

inst/doc/GeneNetworkFromGenes.Rmd

inst/doc/GeneNetworkBuilder_vignettes.html

inst/doc/with.BioGRID.STRING.html

inst/htmlwidgets/browseNetwork.yaml

inst/htmlwidgets/browseNetwork.js

inst/htmlwidgets/lib/panzoom/cytoscape.js-panzoom.css

inst/htmlwidgets/lib/panzoom/cytoscape-panzoom.js

inst/htmlwidgets/lib/searchbox/cytoscape-searchbox.js

inst/htmlwidgets/lib/searchbox/cytoscape-searchbox.css

inst/htmlwidgets/lib/qtip2/cytoscape-qtip.js

inst/htmlwidgets/lib/qtip2/jquery.qtip.min.js

inst/htmlwidgets/lib/qtip2/jquery.qtip.min.css

inst/htmlwidgets/lib/fontawesome/less/screen-reader.less

inst/htmlwidgets/lib/fontawesome/less/fixed-width.less

inst/htmlwidgets/lib/fontawesome/less/variables.less

inst/htmlwidgets/lib/fontawesome/less/rotated-flipped.less

inst/htmlwidgets/lib/fontawesome/less/list.less

inst/htmlwidgets/lib/fontawesome/less/stacked.less

inst/htmlwidgets/lib/fontawesome/less/core.less

inst/htmlwidgets/lib/fontawesome/less/icons.less

inst/htmlwidgets/lib/fontawesome/less/path.less

inst/htmlwidgets/lib/fontawesome/less/larger.less

inst/htmlwidgets/lib/fontawesome/less/font-awesome.less

inst/htmlwidgets/lib/fontawesome/less/bordered-pulled.less

inst/htmlwidgets/lib/fontawesome/less/mixins.less

inst/htmlwidgets/lib/fontawesome/less/animated.less

inst/htmlwidgets/lib/fontawesome/scss/_bordered-pulled.scss

inst/htmlwidgets/lib/fontawesome/scss/_path.scss

inst/htmlwidgets/lib/fontawesome/scss/_variables.scss

inst/htmlwidgets/lib/fontawesome/scss/_list.scss

inst/htmlwidgets/lib/fontawesome/scss/_larger.scss

inst/htmlwidgets/lib/fontawesome/scss/_icons.scss

inst/htmlwidgets/lib/fontawesome/scss/font-awesome.scss

inst/htmlwidgets/lib/fontawesome/scss/_fixed-width.scss

inst/htmlwidgets/lib/fontawesome/scss/_screen-reader.scss

inst/htmlwidgets/lib/fontawesome/scss/_stacked.scss

inst/htmlwidgets/lib/fontawesome/scss/_animated.scss

inst/htmlwidgets/lib/fontawesome/scss/_rotated-flipped.scss

inst/htmlwidgets/lib/fontawesome/scss/_mixins.scss

inst/htmlwidgets/lib/fontawesome/scss/_core.scss

inst/htmlwidgets/lib/fontawesome/fonts/fontawesome-webfont.svg

inst/htmlwidgets/lib/fontawesome/fonts/FontAwesome.otf

inst/htmlwidgets/lib/fontawesome/fonts/fontawesome-webfont.woff2

inst/htmlwidgets/lib/fontawesome/fonts/fontawesome-webfont.woff

inst/htmlwidgets/lib/fontawesome/fonts/fontawesome-webfont.eot

inst/htmlwidgets/lib/fontawesome/fonts/fontawesome-webfont.ttf

inst/htmlwidgets/lib/fontawesome/css/font-awesome.css

inst/htmlwidgets/lib/fontawesome/css/font-awesome.min.css

inst/htmlwidgets/lib/jquery/jquery.min.js

inst/htmlwidgets/lib/exportbox/cytoscape-exportbox.js

inst/htmlwidgets/lib/exportbox/cytoscape-exportbox.css

inst/htmlwidgets/lib/cytoscape/cytoscape.min.js

inst/unitTests/test_geneNetworkBuilder.R

GeneNetworkBuilder documentation built on Nov. 8, 2020, 8:24 p.m.