Appliation for discovering direct or indirect targets of transcription factors using ChIP-chip or ChIP-seq, and microarray or RNA-seq gene expression data. Inputting a list of genes of potential targets of one TF from ChIP-chip or ChIP-seq, and the gene expression results, GeneNetworkBuilder generates a regulatory network of the TF.
|Author||Jianhong Ou , Haibo Liu, Heidi A Tissenbaum and Lihua Julie Zhu|
|Bioconductor views||GraphAndNetwork Microarray Sequencing|
|Maintainer||Jianhong Ou <[email protected]>|
|License||GPL (>= 2)|
|Package repository||View on Bioconductor|
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