GeneNetworkBuilder: GeneNetworkBuilder: a bioconductor package for building regulatory network using ChIP-chip/ChIP-seq data and Gene Expression Data

Appliation for discovering direct or indirect targets of transcription factors using ChIP-chip or ChIP-seq, and microarray or RNA-seq gene expression data. Inputting a list of genes of potential targets of one TF from ChIP-chip or ChIP-seq, and the gene expression results, GeneNetworkBuilder generates a regulatory network of the TF.

Package details

AuthorJianhong Ou, Haibo Liu, Heidi A Tissenbaum and Lihua Julie Zhu
Bioconductor views GraphAndNetwork Microarray Sequencing
MaintainerJianhong Ou <>
LicenseGPL (>= 2)
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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GeneNetworkBuilder documentation built on Nov. 8, 2020, 8:24 p.m.