README.md

GeneNetworkBuilder

platforms build

Build Regulatory Network from ChIP-chip/ChIP-seq and Expression Data

Appliation for discovering direct or indirect targets of transcription factors using ChIP-chip or ChIP-seq, and microarray or RNA-seq gene expression data. Inputting a list of genes of potential targets of one TF from ChIP-chip or ChIP-seq, and the gene expression results, GeneNetworkBuilder generates a regulatory network of the TF.

Installation

To install this package, start R and enter:

library(BiocInstaller)
biocLite("GeneNetworkBuilder")

Documentation

To view documentation of GeneNetworkBuilder, start R and enter:

browseVignettes("GeneNetworkBuilder")


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GeneNetworkBuilder documentation built on Nov. 17, 2017, 12:12 p.m.