buildNetwork: construct the regulatory network

Description Usage Arguments Value Examples

View source: R/networkBuilder.R

Description

Get all the connections of interesting genes from regulatory map.

Usage

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buildNetwork(TFbindingTable, interactionmap, level = 3)

Arguments

TFbindingTable

a matrix or data.frame with interesting genes. Column names must be 'from', 'to'

interactionmap

Transcription regulatory map. Column names of interactionmap must be 'from','to'

level

Depth of node path

Value

a dataframe or matrix of all the connections of interesting genes

Examples

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data("ce.interactionmap")
data("example.data")
xx<-buildNetwork(example.data$ce.bind, ce.interactionmap, level=2)

GeneNetworkBuilder documentation built on Nov. 17, 2017, 12:12 p.m.