networkFromGenes: Build network by a list of given genes

In GeneNetworkBuilder: GeneNetworkBuilder: a bioconductor package for building regulatory network using ChIP-chip/ChIP-seq data and Gene Expression Data

Description

By providing a list of given genes, build a network for input of filterNetwork.

Usage

networkFromGenes(genes, interactionmap, level = 3)

Arguments

genes	A vector of character for interested genes.
interactionmap	Transcription regulatory map. Column names of interactionmap must be 'from','to'
level	Depth of node path

Value

a list with elements: rootgene: The nodes with maximal connetions. sifNetwork: Transcription regulatory network table.

Examples

data("ce.interactionmap")
data("example.data")
genes <- as.character(example.data$ce.bind$from)
xx<-networkFromGenes(example.data$ce.bind, ce.interactionmap, level=2)

Example output

Loading required package: Rcpp
No transcription regulatory network.

GeneNetworkBuilder documentation built on Nov. 8, 2020, 8:24 p.m.