dot-readBam: Function to read in interaction-data stored in a BAM file
In GenomicInteractions: Utilities for handling genomic interaction data
Description
Usage
Arguments
Value
Description
Reads in interactions stored in a BAM file. Assumes that each interaction is represented by pair of PETs
with the same qname. The function reads in and determines which anchor is which by examining the
isFirstMateRead and isSecondMateRead fields in the BAM file.
Usage
1
.readBam(fn)
Arguments
fn
name of BAM file containing interaction information
Value
list of GRanges - storing the anchor information for each interaction
GenomicInteractions documentation built on Nov. 8, 2020, 8:19 p.m.
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Description Usage Arguments Value
Description
Reads in interactions stored in a BAM file. Assumes that each interaction is represented by pair of PETs with the same qname. The function reads in and determines which anchor is which by examining the isFirstMateRead and isSecondMateRead fields in the BAM file.
Usage
1 | .readBam(fn)
|
Arguments
fn |
name of BAM file containing interaction information |
Value
list of GRanges - storing the anchor information for each interaction
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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