plotSummaryStats: Plot summary statistics for a GInteractions object

Description Usage Arguments Value Examples

View source: R/plotSummaryStats.R

Description

Makes summary plots of the counts, interaction distances, interaction annotations, and percentage of cis and trans interactions for a GInteractions object using 'plotCounts', 'plotDists', 'plotCisTrans', and 'plotInteractionAnnotations'.

Usage

1
plotSummaryStats(GIObject, other = 5, cut = 10)

Arguments

GIObject

A GInteractions object

other

Default 5. Passed to plotInteractionAnnotations. Interaction types making up fewer than 'other' percent of the total interactions will be consolidated into a single 'other' category.

cut

Default 10. Passed to plotCounts.All interactions with counts > cut are consolidated into a single category.

Value

invisible(1)

Examples

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GenomicInteractions documentation built on Nov. 8, 2020, 8:19 p.m.